T1 and T2 -weighed images¶
One individual report per input structural volume will be generated
in the path
An example report is given
The individual report for the structural images is structured as follows:
The first section summarizes some important information:
- subject identifier, date and time of execution of
mriqc, software version;
- workflow details and flags raised during execution; and
- the extracted IQMs.
The section with visual reports contains:
Mosaic view, zoomed-in over the parenchyma of the brain.
Mosaic view with background noise enhancement.
If mriqc was run with the
--verbose-reports flag, the
following plots will be appended:
Mosaic view with animation for assessment of the co-registration to MNI space (roll over the image to activate the animation).
Three rows of axial views at different Z-axis points showing: the calculated brain mask, the segmentation done with FSL FAST and a saturated view of the background.
Two rows of coronal views, showing the object/background segmentation, and the air/no-air segmentation.
The \(\chi^2\) function fitting for the calculation of the QI2:
If some metadata was found in the BIDS structure, it is reported here.