# T1 and T2 -weighed images¶

One individual report per input structural volume will be generated in the path <output_dir>/reports/sub-IDxxx_T1w.html. An example report is given here.

The individual report for the structural images is structured as follows:

## Summary¶

The first section summarizes some important information:

• subject identifier, date and time of execution of mriqc, software version;
• workflow details and flags raised during execution; and
• the extracted IQMs.

## Visual reports¶

The section with visual reports contains:

1. Mosaic view, zoomed-in over the parenchyma of the brain.

2. Mosaic view with background noise enhancement.

## Verbose reports¶

If mriqc was run with the --verbose-reports` flag, the following plots will be appended:

1. Mosaic view with animation for assessment of the co-registration to MNI space (roll over the image to activate the animation).

2. Three rows of axial views at different Z-axis points showing: the calculated brain mask, the segmentation done with FSL FAST and a saturated view of the background.

3. Two rows of coronal views, showing the object/background segmentation, and the air/no-air segmentation.

4. The $$\chi^2$$ function fitting for the calculation of the QI2: