mriqc
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Introduction
Installation
Running mriqc
Run mriqc with docker
Image Quality Metrics (IQMs)
Visual Reports
Workflows
The MRIQC classifier for T1w images
Data Sharing Agreement
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framework licensing
License information
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mriqc
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Index
A
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B
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C
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E
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F
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G
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H
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I
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L
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M
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P
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R
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S
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U
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V
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W
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X
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Z
A
airmsk_wf() (in module mriqc.workflows.anatomical)
anat_qc_workflow() (in module mriqc.workflows)
(in module mriqc.workflows.anatomical)
art_qi1() (in module mriqc.qc.anatomical)
art_qi2() (in module mriqc.qc.anatomical)
B
balanced_leaveout() (in module mriqc.classifier.data)
C
cjv() (in module mriqc.qc.anatomical)
cnr() (in module mriqc.qc.anatomical)
combine_datasets() (in module mriqc.classifier.data)
compute_iqms() (in module mriqc.workflows.anatomical)
(in module mriqc.workflows.functional)
CVHelper (class in mriqc.classifier.helper)
CVHelperBase (class in mriqc.classifier.helper)
E
efc() (in module mriqc.qc.anatomical)
epi_mni_align() (in module mriqc.workflows.functional)
estimator() (mriqc.classifier.helper.CVHelper property)
evaluate() (mriqc.classifier.helper.CVHelper method)
F
fber() (in module mriqc.qc.anatomical)
fit() (mriqc.classifier.helper.CVHelper method)
(mriqc.classifier.helper.CVHelperBase method)
fit_full() (mriqc.classifier.helper.CVHelper method)
fmri_bmsk_workflow() (in module mriqc.workflows.functional)
fmri_qc_workflow() (in module mriqc.workflows)
(in module mriqc.workflows.functional)
ftnames() (mriqc.classifier.helper.CVHelperBase property)
G
gen_html() (in module mriqc.reports.group)
get_bids_cols() (in module mriqc.classifier.data)
get_groups() (in module mriqc.classifier.data)
gradient_threshold() (in module mriqc.workflows.anatomical)
group_html() (in module mriqc.reports)
gsr() (in module mriqc.qc.functional)
H
headmsk_wf() (in module mriqc.workflows.anatomical)
hmc() (in module mriqc.workflows.functional)
I
image_gradient() (in module mriqc.workflows.anatomical)
individual_html() (in module mriqc.reports)
(in module mriqc.reports.individual)
individual_reports() (in module mriqc.workflows.anatomical)
(in module mriqc.workflows.functional)
iqms2html() (in module mriqc.reports.utils)
L
load() (mriqc.classifier.helper.CVHelper method)
M
module
mriqc.classifier
mriqc.classifier.data
mriqc.classifier.helper
mriqc.qc
mriqc.qc.anatomical
mriqc.qc.functional
mriqc.reports
mriqc.reports.group
mriqc.reports.individual
mriqc.reports.utils
mriqc.workflows
mriqc.workflows.anatomical
mriqc.workflows.functional
mriqc.classifier
module
mriqc.classifier.data
module
mriqc.classifier.helper
module
mriqc.qc
module
mriqc.qc.anatomical
module
mriqc.qc.functional
module
mriqc.reports
module
mriqc.reports.group
module
mriqc.reports.individual
module
mriqc.reports.utils
module
mriqc.workflows
module
mriqc.workflows.anatomical
module
mriqc.workflows.functional
module
P
predict() (mriqc.classifier.helper.CVHelper method)
(mriqc.classifier.helper.CVHelperBase method)
predict_dataset() (mriqc.classifier.helper.CVHelper method)
(mriqc.classifier.helper.CVHelperBase method)
R
rate_column() (mriqc.classifier.helper.CVHelperBase property)
read_dataset() (in module mriqc.classifier.data)
read_iqms() (in module mriqc.classifier.data)
read_labels() (in module mriqc.classifier.data)
read_report_snippet() (in module mriqc.reports.utils)
rpve() (in module mriqc.qc.anatomical)
S
save() (mriqc.classifier.helper.CVHelper method)
setXtest() (mriqc.classifier.helper.CVHelper method)
snr() (in module mriqc.qc.anatomical)
snr_dietrich() (in module mriqc.qc.anatomical)
spatial_normalization() (in module mriqc.workflows.anatomical)
spikes_mask() (in module mriqc.workflows.functional)
summary_stats() (in module mriqc.qc.anatomical)
U
unfold_columns() (in module mriqc.reports.utils)
V
volume_fraction() (in module mriqc.qc.anatomical)
W
wm2max() (in module mriqc.qc.anatomical)
X
Xtest() (mriqc.classifier.helper.CVHelper property)
Z
zscore_dataset() (in module mriqc.classifier.data)
zscore_site() (in module mriqc.classifier.data)
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