Demo: anatomical reports¶
Demo: functional reports¶
How reports work¶
Generate individual and group reports.
In order to ease the screening process of individual images, MRIQC generates individual reports with mosaic views of a number of cutting planes and supporting information (for example, segmentation contours). The most straightforward use-case is the visualization of those images flagged as low-quality by the classifier.
After the extraction of IQMs in all the images of our sample, a group report is generated. The group report shows a scatter plot for each of the IQMs, so it is particularly easy to identify the cases that are outliers for each metric. The plots are interactive, such that clicking on any particular sample opens the corresponding individual report of that case. Examples of group and individual reports for the ABIDE dataset are available online at mriqc.org.
Encapsulates report generation functions.
- mriqc.reports.group.gen_html(csv_file, mod, csv_failed=None, out_file=None)¶